PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 887537
Common NameARALYDRAFT_887537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 215aa    MW: 23046.9 Da    PI: 4.8511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
887537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-162171256
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
            +y+GVr+++ +gr++AeIrdp     + kr++lg+f t  eAa+a++ a+++++g+
  887537 21 RYRGVRRRP-WGRYAAEIRDPI----KkKRVWLGSFYTGVEAARAYDSAAREFHGA 71
            69*******.**********72....35*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-102170IPR001471AP2/ERF domain
SMARTSM003801.5E-312184IPR001471AP2/ERF domain
CDDcd000181.41E-282178No hitNo description
SuperFamilySSF541714.38E-202178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-282178IPR001471AP2/ERF domain
PROSITE profilePS5103222.1942178IPR001471AP2/ERF domain
PRINTSPR003679.8E-92233IPR001471AP2/ERF domain
PRINTSPR003679.8E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MATKKKKVTK AVAVGKSKEV RYRGVRRRPW GRYAAEIRDP IKKKRVWLGS FYTGVEAARA  60
YDSAAREFHG AKAKTNFRLL GEDGNASVTP VNNALSETAP DGNANFLLVG DDVNASAMLV  120
NNSLSETACD GTLPLDCQNL LSPGVAEAVA GFFLDPSDAT ALKEELDRVC PDQFASIDMG  180
LSIGPQTAVE EPETSSAVDC ELRKEPDLDL NLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151779164ATERF1
3gcc_A2e-151779164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12544RRRPWGRYAAEIRDPIKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892180.11e-157hypothetical protein ARALYDRAFT_887537
SwissprotQ9ZWA21e-114ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLD7KD811e-157D7KD81_ARALL; Putative uncharacterized protein
STRINGscaffold_100331.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.14e-96ERF domain protein 10